I completed program 2 conquest map but without finishing all the goals to pick up stars for the program (I did not defeat the Padres stronghold at the 1st attempt.) I got the option to restart when I finished but I chose no. Now all my completed goals are still there but when I complete the Padres missing goal it doesn't finish the map. I have also tried to restart but this has not cleared the goals. Is there anything I can do to completely restart the conquest map?
I think if you press options (like you would if you were to skip a phase) you get the option to restart.
You don't need to repeat anything. Start a new game, beat the Padres in one move, and you've done all the goals. The others will still be complete.
I.E. You don't have do complete all goals on the same run through of the map.
You have to beat the Padres in TURN 1. Which means after you restart you have to go directly to their STRONGHOLD and beat them in that game. It will be on all-star or above. This isn't just beat them on first try, it has to be turn 1 (no stealing fans, no reinforcement, no moving fans).